PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016502969.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 448aa    MW: 50096.5 Da    PI: 9.1017
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016502969.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001828323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C+ C+k F r  nL+ H r H
  XP_016502969.1  8 CEVCNKGFQREQNLQLHRRGH 28
                    *******************88 PP

2zf-C2H214.88.1e-0583105123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C+k +  +s+ k H +t+
  XP_016502969.1  83 FKCEKCSKKYAVQSDWKAHTKTC 105
                     89*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.09E-7528No hitNo description
Gene3DG3DSA:3.30.160.608.3E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97628IPR007087Zinc finger, C2H2
SMARTSM003550.025628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM003552404878IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.0E-571104IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.09E-778103No hitNo description
SMARTSM003558883103IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MATNRFLCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNTK EVVKRKVYLC PEITCVHHET  60
SRALGDLTGI KKHYFRKHGE KKFKCEKCSK KYAVQSDWKA HTKTCGTREY RCDCGTLFSR  120
RDSFITHRAF CVALAQETAR NPVPIHNLGN FSKMQNSTIL DQKYPSSNSI DILSLGNTKT  180
THNQQFNHNL IDTSNIGSNT SNSFFFQESN QDYANIKPIH DLMQQLPNFH NNNMFNLNFF  240
QNNDGNSNMS SGILGDQNIS CSIPSLYGSQ VQNHNLNSTT TSSVAPMSAT ALLQKAAQMG  300
STTSNISTTA LLLKAFGNST NGGNSSSSGT KSDHQVVNFG DNFSDHSGNH LRDINGEAKN  360
FGTPADIVNG VNAYGHDQND YGGGYNAATK LNFEEQQHQL PPQKKQLTRD FLGVGEIVRS  420
MSGGFSSQRE QQQQQQSNQS FISPENFQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-107HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016502969.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ9ZUL31e-103IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLM1CVT11e-161M1CVT1_SOLTU; Uncharacterized protein
TrEMBLM1CVT31e-161M1CVT3_SOLTU; Uncharacterized protein
STRINGSolyc04g008500.2.11e-160(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.23e-83indeterminate(ID)-domain 4